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2012

ARTICLES : Comitee of reading (ACL - ACLN)

 Abdallah C., Sergeant K., Guillier C., Dumas-Gaudot E., Leclercq C.C., Renaut J. (2012). Optimization of iTRAQ labelling coupled to OFFGEL fractionation as a proteomic workflow to the analysis of microsomal proteins of Medicago truncatula roots. Proteome Sci. 10:article 37 (12p.).

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Abirached-Darmency M., Dessaint F., Benlicha E., Schneider C. (2012). Biogenesis of protein bodies during vicilin accumulation in Medicago truncatula immature seeds. BMC Research Notes. 5:409 (8p.).

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Adam T., Bouhidel K., Der C., Robert F., Najid A., Simon-Plas F., Leborgne-Castel N. (2012). Constitutive expression of clathrin hub hinders elicitor-induced clathrin-mediated endocytosis and defense gene expression in plant cells. FEBS Lett. 586:3293-3298.

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Adrian M., Jeandet P. (2012). Effects of resveratrol on the ultrastructure of Botrytis cinerea conidia and biological significance in plant/pathogen interactions. Fitoterapia. 83:1345-1350.

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Alignier A., Petit S. (2012). Factors shaping the spatial variation of weed communities across a landscape mosaic. Weed Res. 52:402-410.

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Alignier A., Bretagnolle V., Petit S. (2012). Spatial patterns of weeds along a gradient of landscape complexity. Basic Appl. Ecol. 13:328-337.

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Aloui A., Dumas-Gaudot E., Daher Z., van Tuinen D., Aschi-Smit S., Morandi D. (2012). Influence of arbuscular mycorrhizal colonisation on cadmium induced Medicago truncatula root isoflavonoid accumulation. Plant Physiol. Biochem. 60:233-239.

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Astier J., Besson-Bard A., Lamotte O., Bertoldo J., Bourque S., Terenzi H., Wendehenne D. (2012). Nitric oxide inhibits the ATPase activity of the chaperone-like AAA plus ATPase CDC48, a target for S-nitrosylation in cryptogein signalling in tobacco cells. Biochem. J. 447:249-260.

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Astier J., Kulik A., Koen E., Besson-Bard A., Bourque S., Jeandroz S., Lamotte O., Wendehenne D. (2012). Protein S-nitrosylation: What's going on in plants? Free Radic. Biol. Med. 53:1101-1110.

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Avolio M., Muller T., Mpangara A., Fitz M., Becker B., Pauck A., Kirsch A., Wipf D. (2012). Regulation of genes involved in nitrogen utilization on different C/N ratios and nitrogen sources in the model ectomycorrhizal fungus Hebeloma cylindrosporum. Mycorrhiza. 22:515-524.

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Badenhausser I., Cordeau S. (2012). Sown grass strip—A stable habitat for grasshoppers (Orthoptera: Acrididae) in dynamic agricultural landscapes. Agric. Ecosyst. Environ. 159:105-111.

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Bani-Sadr F., Krastinova E., Fromentin D., Piroth L., Rosenthal E., Quertainmont Y., Perronne C., Cacoub P., Pol S., Carrat F., ANRS C0 07-Ribavic Study Team (2012). Severe transaminitis after interferon-ribavirin therapy in HIV/HCV-coinfected patients: influence of a sustained HCV response. J. Viral Hepatitis. 19:431-435.

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Bellanger S., Guillemin J.P., Bretagnolle V., Darmency H. Centaurea cyanus as a biological indicator of segetal species richness in arable fields. Weed Res. 52:551-563.

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Biron A., Bobin-Dubigeon C., Volteau C., Piroth L., Perré P., Leport C., Prazuck T., Jovelin T., Billard M., Sébille V., Bard J.M., Raffi F., Biron C. (2012). Metabolic syndrome in french HIV-infected patients: prevalence and predictive factors after 3 years of antiretroviral therapy. AIDS Res Hum Retroviruses. 28:1672-1678.

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Blot M., Piroth L. (2012). L’infection par le VIH en France en 2012: réalité, risques et enjeux d’une polypathologie chronique. Rev. Mal. Respir. 29:785-792.

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Bohan D.A., Haughton A.J. (2012). Effects of local landscape richness on in-field weed metrics across the Great Britain scale. Agric. Ecosyst. Environ. 158:208-215.

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Borgy B., Gaba S., Petit S., Reboud X. (2012). Non-random distribution of weed species abundance in arable fields. Weed Res. 52:383-389.

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Bourgeois A., Gaba S., Munier-Jolain N., Borgy B., Monestiez P., Soubeyrand S. (2012). Inferring weed spatial distribution from multi-type data. Ecol. Model. 226:92-98.

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Braun N., de Saint Germain A., Pillot J.-P., Boutet-Mercey S., Dalmais M., Antoniadi I., Li X., Maia-Grondard A., Le Signor C., Bouteiller N., Luo D., Bendahmane A., Turnbull C., Rameau C. (2012). The Pea TCP Transcription Factor PsBRC1 Acts Downstream of Strigolactones to Control Shoot Branching. Plant Physiol. 158:225-238.

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Brito I., Goss M.J., de Carvalho M., Chatagnier O., van Tuinen D. (2012). Impact of tillage system on arbuscular mycorrhiza fungal communities in the soil under Mediterranean conditions. Soil Tillage Res. 121:63-67.

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Brooks D.R., Storkey J., Clark S.J., Firbank L.G., Petit S., Woiwod I.P. (2012). Trophic links between functional groups of arable plants and beetles are stable at a national scale. J. Anim. Ecol. 81:4-13.

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Cacas J.-L., Melser S., Domergue F., Joubès J., Bourdenx B., Schmitter J.-M., Mongrand S. (2012). Rapid nanoscale quantitative analysis of plant sphingolipid long-chain bases by GC-MS. Anal. Bioanal. Chem. 403:2745-2755.

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Cacas J.-L., Furt F., Le Guédard M., Schmitter J.-M., Buré C., Gerbeau-Pissot P., Moreau P., Bessoule J.-J., Simon-Plas F., Mongrand S. (2012). Lipids of plant membrane rafts. Prog. Lipid Res. 51:272-299.

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Calvayrac C., Martin-Laurent F., Faveaux A., Picault N., Panaud O., Coste C.M., Chaabane H., Cooper J.F. (2012). Isolation and characterisation of a bacterial strain degrading the herbicide sulcotrione from an agricultural soil. Pest Manag. Sci. 68:340-347.

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Casieri L, Gallardo K, Wipf D. (2012). Transcriptional response of Medicago truncatula sulphate transporters to arbuscular mycorrhizal symbiosis with and without sulphur stress. Planta. 235:1431-1447.

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Chavanet P. (2012). Pneumococcus infections: Is the burden still as heavy? Med. Mal. Infect. 42:149-153.

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Cheyns K., Calcoen J., Martin-Laurent F., Bru D., Smolders E., Springael D. (2012). Effects of dissolved organic matter (DOM) at environmentally relevant carbon concentrations on atrazine degradation by Chelatobacter heintzii SalB. Appl. Microbiol. Biotechnol. 95:1333-1341.

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Cheyns K., Martin-Laurent F., Bru D., Aamand J., Vanhaecke L., Diels J., Merckx R., Smolders E., Springael D. (2012). Long-term dynamics of the atrazine mineralization potential in surface and subsurface soil in an agricultural field as a response to atrazine applications. Chemosphere. 86:1028-1034.

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Cluzeau D., Guernion M., Chaussod R., Martin-Laurent F., Villenave C., Cortet J., Ruiz-Camacho N., Pernin C., Mateille T., Philippot L., Bellido A., Rougé L., Arrouays D., Bispo A., Pérès G. (2012). Integration of biodiversity in soil quality monitoring: Baselines for microbial and soil fauna parameters for different land-use types. Eur. J. Soil Biol. 49:63-72.

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Cordeau S., Petit S., Reboud X., Chauvel B. (2012). The impact of sown grass strips on the spatial distribution of weed species in adjacent boundaries and arable fields. Agric. Ecosyst. Environ. 155:35-40.

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Cordeau S., Petit S., Reboud X., Chauvel B. (2012). Sown grass strips harbour high weed diversity but decrease weed richness in adjacent crops. Weed Res. 52:88-97.

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Cornut P.-L., Thuret G., Creuzot-Garcher C., Maurin M., Pechinot A., Bron A., Gain P., Carricajo A., Denis P., Romanet J.-P., Vandenesch F., Chiquet C., French Inst Endophthalmitis S.G., (Collaborators: Bonnin A. Dalle F. and al...) (2012). Relationship between baseline clinical data and microbiologic spectrum in 100 patients with acute postcataract endophthalmitis. Retin.-J. Retin. Vitr. Dis. 32:549-557.

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Délye C., Causse R. (2012). Résistance aux inhibiteurs de l'ALS: gare aux dicots! Après le coquelicot et les matricaires, la stellaire fait de la résistance. Phytoma. 657.

De Mita S., Siol M. (2012). EggLib: processing, analysis and simulation tools for population genetics and genomics. BMC Genet. 13:(12p.).

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D'Erfurth I., Le Signor C., Aubert G., Sanchez M., Vernoud V., Darchy B., Lherminier J., Bourion V., Bouteiller N., Bendahmane A., Buitink J., Prosperi J.M., Thompson R., Burstin J., Gallardo K. (2012). A role for an endosperm-localized subtilase in the control of seed size in legumes. New Phytol. 196:738-751.

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Deytieux V., Nemecek T., Knuchel R.F., Gaillard G., Munier-Jolain N. (2012). Is Integrated Weed Management efficient for reducing environmental impacts of cropping systems? A case study based on life cycle assessment. Eur. J. Agron. 36:55-65.

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Doidy J., Grace E., Kuhn C., Simon-Plas F., Casieri L., Wipf D. (2012). Sugar transporters in plants and in their interactions with fungi. Trends Plant Sci. 17:413-422.

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Doidy J., van Tuinen D., Lamotte O., Corneillat M., Alcaraz G., Wipf D. (2012). The Medicago truncatula Sucrose Transporter Family: Characterization and Implication of Key Members in Carbon Partitioning towards Arbuscular Mycorrhizal Fungi. Mol. Plant. 5:1346-1358.

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Dokladal L., Oboril M., Stejskal K., Zdrahal Z., Ptackova N., Chaloupkova R., Damborsky J., Kasparovsky T., Jeandroz S., Zd'arska M., Lochman J. (2012). Physiological and proteomic approaches to evaluate the role of sterol binding in elicitin-induced resistance. J. Exp. Bot. 63:2203-2215.

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Dubreuil-Maurizi C., Poinssot B. (2012). Role of glutathione in plant signaling under biotic stress. Plant Signal Behav. 7:210-212.

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Edel-Hermann V., Gautheron N., Steinberg C. (2012). Genetic diversity of Fusarium oxysporum and related species pathogenic on tomato in Algeria and other Mediterranean countries. Plant Pathol. 61:787-800.

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El Azhari N., Lainé S., Sappin-Didier V., Beguet J., Rouard N., Philippot L., Martin-Laurent F. (2012). Long-term impact of 19 years’ farmyard manure or sewage sludge application on the structure, diversity and density of the protocatechuate-degrading bacterial community. Agric. Ecosyst. Environ. 158:72-82.

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Fiers M., Edel-Hermann V., Chatot C., Le Hingrat Y., Alabouvette C., Steinberg C. (2012). Potato soil-borne diseases. A review. Agron. Sustain. Dev. 32:93-132.

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Flores F., Nadal S., Solis I., Winkler J., Sass O., Stoddard F.L., Link W., Raffiot B., Muel F., Rubiales D. (2012). Faba bean adaptation to autumn sowing under European climates. Agron. Sustain. Dev. 32:727-734.

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Fried G., Kazakou E., Gaba S. (2012). Trajectories of weed communities explained by traits associated with species’ response to management practices. Agric. Ecosyst. Environ. 158:147-155.

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Gardarin A., Dürr C., Colbach N. (2012). Modeling the dynamics and emergence of a multispecies weed seed bank with species traits. Ecol. Model. 240:123-138.

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Garmyn D., Augagneur Y., Gal L., Vivant A.-L., Piveteau P. (2012). Listeria monocytogenes differential transcriptome analysis reveals temperature-dependent agr regulation and suggests overlaps with other regulons. PLoS One. 7:e43154 (13p.).

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Ghirardi S., Dessaint F., Mazurier S., Corberand T., Raaijmakers J.M., Meyer J.M., Dessaux Y., Lemanceau P. (2012). Identification of traits shared by rhizosphere-competent strains of fluorescent pseudomonads. Microb. Ecol. 64:725-737.

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Gibot-Leclerc S., Sallé G., Reboud X., Moreau D. (2012). What are the traits of Phelipanche ramosa (L.) Pomel that contribute to the success of its biological cycle on its host Brassica napus L.? Flora. 207:512-521.

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Gogé F., Joffre R., Jolivet C., Ross I., Ranjard L. (2012). Optimization criteria in sample selection step of local regression for quantitative analysis of large soil NIRS database. Chemometrics Intell. Lab. Syst. 110:168-176.

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Goux X., Amiaud B., Piutti S., Philippot L., Benizri E. (2012). Spatial distribution of the abundance and activity of the sulfate ester-hydrolyzing microbial community in a rape field. J. Soils Sediments. 12:1360-1370.

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Goyer M., Lucchi G., Ducoroy P., Vagner O., Bonnin A., Dalle F. (2012). Optimization of the preanalytical steps of matrix-assisted laser desorption ionization-time of flight mass spectrometry identification provides a flexible and efficient tool for identification of clinical yeast isolates in medical laboratories. J. Clin. Microbiol. 50:3066-3068.

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Gravot A., Deleu C., Wagner G., Lariagon C., Lugan R., Todd C., Wendehenne D., Delourme R., Bouchereau A., Manzanares-Dauleux M.J. (2012). Arginase induction represses gall development during clubroot infection in Arabidopsis. Plant Cell Physiol. 53:901-911.

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Guermache F., Rodier-Goud M., Caesar A., Héraud C., Bon M.C. (2012). Bi-fluorescence imaging for estimating accurately the nuclear condition of Rhizoctonia spp. Lett. Appl. Microbiol. 54:568-571.

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Guillon F., Larre C., Petipas F., Berger A., Moussawi J., Rogniaux H., Santoni A.-L., Saulnier L., Jamme F., Miquel M., Lepiniec L., Dubreucq B. (2012). A comprehensive overview of grain development in Brachypodium distachyon variety Bd21. J. Exp. Bot. 63:739-755.

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Guinier D., Morlevat F., L'Ollivier C., Dalle F., Bonnin A. (2012). Une dirofilariose inguinale simulant une hernie. Presse Med. 41:759-761.

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Gupta R., Bru D., Bisaria V.S., Philippot L., Sharma S. (2012). Responses of Cajanus cajan and rhizospheric N-cycling communities to bioinoculants. Plant Soil. 358:143-154.

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Hafeez F., Spor A., Breuil M.C., Schwartz C., Martin-Laurent F., Philippot L. (2012). Distribution of bacteria and nitrogen-cycling microbial communities along constructed Technosol depth-profiles. J. Hazard. Mater. 231-232:88-97.

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Hafeez F., Martin-Laurent F., Béguet J., Bru D., Cortet J., Schwartz C., Morel J.-L., Philippot L. (2012). Taxonomic and functional characterization of microbial communities in Technosols constructed for remediation of a contaminated industrial wasteland. J. Soils Sediments. 12:1396-1406.

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Hallin S., Welsh A., Stenstrom J., Hallet S., Enwall K., Bru D., Philippot L. (2012). Soil Functional Operating Range Linked to Microbial Biodiversity and Community Composition Using Denitrifiers as Model Guild. PLoS One. 7:e51962 (8p.).

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Hamet M., Pavon A., Dalle F., Pechinot A., Prin S., Quenot J.P., Charles P.E. (2012). Candida spp. airway colonization could promote antibiotic-resistant bacteria selection in patients with suspected ventilator-associated pneumonia. Intensive Care Med. 38:1272-1279.

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Hao Z., Fayolle L., van Tuinen D., Chatagnier O., Li X., Gianinazzi S., Gianinazzi-Pearson V. (2012). Local and systemic mycorrhiza-induced protection against the ectoparasitic nematode Xiphinema index involves priming of defence gene responses in grapevine. J. Exp. Bot. 63:3657-3672.

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Hartmann A., Locatelli A., Amoureux L., Depret G., Jolivet C., Gueneau E., Neuwirth C. (2012). Occurrence of CTX-M producing Escherichia coli in soils, cattle, and farm environment in France (Burgundy region). Front Microbio. 3:article83, 7p.

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Hayek S., Grosch R., Gianinazzi-Pearson V., Franken P. (2012). Bioprotection and alternative fertilisation of petunia using mycorrhiza in a soilless production system. Agron. Sustain. Dev. 32:765-771.

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 Jing R., Ambrose M.A., Knox M.R., Smykal P., Hybl M., Ramos A., Caminero C., Burstin J., Duc G., van Soest L.J.M., Swiecicki W.K., Pereira M.G., Vishnyakova M., Davenport G.F., Flavell A.J., Ellis T.H.N. (2012). Genetic diversity in European Pisum germplasm collections. Theor. Appl. Genet. 125:367-380.

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Koen E., Szymańska K., Klinguer A., Dobrowolska G., Besson-Bard A., Wendehenne D. (2012). Nitric oxide and glutathione impact the expression of iron uptake- and iron transport-related genes as well as the content of metals in A. thaliana plants grown under iron deficiency. Plant Signal. Behav. 7:1246-1250.

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Kremer A., Le Corre V. (2012). Decoupling of differentiation between traits and their underlying genes in response to divergent selection. Heredity. 108:375-385.

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Kulik A., Anielska-Mazur A., Bucholc M., Koen E., Szymanska K., Zmienko A., Krzywinska E., Wawer I., McLoughlin F., Ruszkowski D., Figlerowicz M., Testerink C., Sklodowska A., Wendehenne D., Dobrowolska G. (2012). SNF1-related protein kinases type 2 are involved in plant responses to cadmium stress. Plant Physiol. 160:868-883.

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Larrat S., Gaillard S., Baccard M., Piroth L., Cacoub P., Pol S., Perronne C., Carrat F., Morand P., French National Agency for Research on AIDS and viral hepatitis HC02 Ribavic Study Team (2012). Hepatitis E virus infection in sheltered homeless persons, France. Emerg. Infect. Dis. 18:1031-1031.

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Le Corre V., Kremer A. (2012). The genetic differentiation at quantitative trait loci under local adaptation. Mol. Ecol. 21:1548-1566.

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Le Guillou C., Angers D.A., Maron P.A., Leterme P., Menasseri-Aubry S. (2012). Linking microbial community to soil water-stable aggregation during crop residue decomposition. Soil Biol. Biochem. 50:126-133.

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Lepinay C., Rigaud T., Salon C., Lemanceau P., Mougel C. (2012). Interaction between Medicago truncatula and Pseudomonas fluorescens. Evaluation of Costs and Benefits across an Elevated Atmospheric CO2. PLoS One. 7:e45740 (10p.).

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Lichtfouse E. (2012). 13C-dating, the first method to calculate the relative age of molecular substance homologues in soil. Environ. Chem. Lett . 10:97-103.

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Lichtfouse E., Schwarzbauer J., Robert D. (2012). Social Chemistry. Environ. Chem. Lett. 10:1-4.

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Liu Y.B., Tang Z.X., Darmency H., Stewart C.N.Jr, Di K., Wei W., Ma K.P. (2012). The effects of seed size on hybrids formed between oilseed rape (Brassica Napus) and wild brown mustard (B. Juncea). PLoS One. 7:e39705.

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L'Ollivier C., Labruère C., Jebrane A., Bougnoux M.-E., d’Enfert C., Bonnin A., Dalle F. (2012). Using a Multi-Locus Microsatellite Typing method improved phylogenetic distribution of Candida albicans isolates but failed to demonstrate association of some genotype with the commensal or clinical origin of the isolates. Infect. Genet. Evol. 12:1949-1957.

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L'Ollivier C., Gonzalez L.M., Garate T., Martin L., Martha B., Duong M., Huerre M., Cuisenier B., Harrison L.J.S., Dalle F., Bonnin A. (2012). Histological and molecular biology diagnosis of neurocysticercosis in a patient without history of travel to endemic areas - case report. Parasite-J. Soc. Fr. Parasitol. 19:441-444.

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Lyautey E., Hartmann A., Lapen D.R., Topp E. (2012). A comparison of enrichment and direct-plating methods for isolation of Listeria monocytogenes from surface water. Can J. Microbiol. 58:1405-1410.

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Manzoor H., Chiltz A., Madani S., Vatsa P., Schoefs B., Pugin A., Garcia-Brugger A. (2012). Calcium signatures and signaling in cytosol and organelles of tobacco cells induced by plant defense elicitors. Cell Calcium. 51:434-444.

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Martin F., Torelli S., Le Paslier D., Barbance A., Martin-Laurent F., Bru D., Geremia R., Blake G., Jouanneau Y. (2012). Betaproteobacteria dominance and diversity shifts in the bacterial community of a PAH-contaminated soil exposed to phenanthrene. Environ. Pollut. 162:345-353.

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Martin-Sanchez P.M., Novakova A., Bastian F., Alabouvette C., Saiz-Jimeneza C. (2012). Two new species of the genus Ochroconis, O.lascauxensis and O. anomala isolated from black stains in Lascaux Cave, France. Fungal Biol. 116:574-589.

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Michielse C.B., Reijnen L., Olivain C., Alabouvette C., Rep M. (2012). Degradation of aromatic compounds through the beta-ketoadipate pathway is required for pathogenicity of the tomato wilt pathogen Fusarium oxysporum f. sp. lycopersici. Mol. Plant Pathol. 13:1089-1100.

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Monard C., McHergui C., Nunan N., Martin-Laurent F., Vieuble-Gonod L. (2012). Impact of soil matric potential on the fine-scale spatial distribution and activity of specific microbial degrader communities. FEMS Microbiol. Ecol. 81:673-683.

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Moreau D., Salon C., Munier-Jolain N. (2012). How to hierarchize the main physiological processes responsible for phenotypic differences in large-scale screening studies? Plant Signal. Behav. 7:311-313.

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Moreau D., Allard V., Gaju O., Le Gouis J., Foulkes M.J., Martre P. (2012). Acclimation of Leaf Nitrogen to Vertical Light Gradient at Anthesis in Wheat Is a Whole-Plant Process That Scales with the Size of the Canopy. Plant Physiol. 160:1479-1490.

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Moreau D., Burstin J., Aubert G., Huguet T., Ben C., Prosperi J.-M., Salon C., Munier-Jolain N. (2012). Using a physiological framework for improving the detection of quantitative trait loci related to nitrogen nutrition in Medicago truncatula . Theor. Appl. Genet. 124:755-768.

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Petit S., Fried G. (2012). Patterns of weed co-occurrence at the field and landscape level. J. Veg. Sci. 23:1137-1147.

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Petit C., Pernin F., Heydel J.M., Délye C. (2012). Validation of a set of reference genes to study response to herbicide stress in grasses. BMC Research Notes. 5:(10p.).

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Peyretaillade E., Parisot N., Polonais V., Terrat S., Denonfoux J., Dugat-Bony E., Wawrzyniak I., Biderre-Petit C., Mahul A., Rimour S., Goncalves O., Bornes S., Delbac F., Chebance B., Duprat S., Samson G., Katinka M., Weissenbach J., Wincker P., Peyret P. (2012). Annotation of microsporidian genomes using transcriptional signals. Nat. Commun. 3:art.1137 (9p.).

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Philippot L., Ritz K., Pandard P., Hallin S., Martin-Laurent F. (2012). Standardisation of methods in soil microbiology: progress and challenges. FEMS Microbiol. Ecol. 82:1-10.

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Picque J.B., Blot M., Binois R., Jeudy G., Simonet A.L., Cagnon J., Mahy S., Duong M., Buisson M., Chavanet P., Piroth L. (2012). Infections récurrentes à mycobactéries atypiques chez l’adulte: attention aux autoanticorps anti-interféron-gamma! Rev. Med. Interne. 33:103-106.

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