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Dernière mise à jour : Mai 2018

Menu Logo Principal UB AgroSup CNRS

UMR Agroécologie

2016

ARTICLES A COMITÉ DE LECTURE
  • Ait Lahmidi N., Courty P.-E., Brule D., Chatagnier O., Arnould C., Doidy J., Berta G., Lingua G., Wipf D., Bonneau L. (2016). Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both sugar uptake from the soil and from the plant partner. Plant Physiol. Biochem. 107:354-363. 
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  • Aluome C., Aubert G., Alves-Carvalho S., Le Paslier D., Burstin J., Brunel D. (2016). De novo construction of a “Gene-space” for diploid plant genome rich in repetitive sequences by an iterative Process of Extraction and Assembly of NGS reads (iPEA protocol) with limited computing resources. BMC Research Notes. 9:art 81 (9p.).
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  • Ayad A., Drissi M., de Curraize C., Dupont C., Hartmann A., Solanas S., Siebor E., Amoureux L., Neuwirth C. (2016). Occurence of ArmA and RmtB Aminoglycoside Resistance 16S rRNA Methylases in Extended-Spectrum β-Lactamases Producing Escherichia coli in Algerian Hospitals. Front. Microbiol. 7:art 1409 (6p.).
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  • Barbier E., Chantemesse B., Rochelet M., Fayolle L., Bollache L., Boschiroli M.L., Hartmann A. (2016). Rapid dissemination of Mycobacterium bovis from cattle dung to soil by the earthworm Lumbricus terrestris. Vet. Microbiol. 186:1-7. 
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  • Barbier E., Boschiroli M.L., Gueneau E., Rochelet M., Payne A., de Cruz K., Blieux A.L., Fossot C., Hartmann A. (2016). First molecular detection of Mycobacterium bovis in environmental samples from a French region with endemic bovine tuberculosis. J. Appl. Microbiol. 120:1193-1207.
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  • Bili M., Cortesero A.-M., Mougel C., Gauthier J.-P., Ermel G., Simon J.-C., Outreman Y., Terrat S., Mahéo F., Poinsot D. (2016). Bacterial community diversity harboured by interacting species. PLoS One. 11:art e0155392 (23p.). 
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  • BohanD.A., Landuyt D., Ma A., Macfadyen S., Martinet V., Massol F., McInerny G., Montoya J.M., Mulder C., Pascual U., Pocock M.J.O., White P., Blanchemanche S., Bonkowski M., Bretagnolle V., Brönmark C., Dicks L., Dumbrell A., Friberg N., Gessner M.O., Gray C., Gill R.J., Haughton A.J., Ibanez S., Jensen J., Jeppesen E., Jokela J., Lacroix G., Lannou C., Lavorel S., Le Galliard J.-F., Lescourret F., Liu S., Loeuille N., McLaughlin O., Muggleton S., Peñuelas J., Petanidou T., Petit S., Pomati F., Raffaelli D., Rasmussen J., Raybould A., Reboud X., Richard G., Scherber C., Scheu S., Sutherland W.J., Tamaddoni-Nezhad A., ter Braak C., Termansen M., Thompson M.S.A., Tscharntke T., Vacher C., van der Geest H., Voigt W., Vonk J.A., Yu D.W., Zhou X., Woodward G., The Quintessence Consortium. (2016). Networking our way to better ecosystem service provision. Trends Ecol. Evol. 31:105-115. 
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  • Bonneau M., Peyrard N., Gaba S., Sabbadin R. (2016). Sampling for weed spatial distribution mapping need not be adaptive. Environ. Ecol. Stat. 23:233-255. 
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  • Borgy B., Perronne R., Kohler C., Grison A.L., Amiaud B., Gaba S. (2016). Changes in functional diversity and intraspecific trait variability of weeds in response to crop sequences and climate. Weed Res. 56:102-113.
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  • Bouchez T., Blieux A.L., Dequiedt S., Domaizon I., Dufresne A., Ferreira S., Godon J.J., Hellal J., Joulian C., Quaiser A., Martin-Laurent F., Mauffret A., Monier J.M., Peyret P., Schmitt-Koplin P., Sibourg O., D’oiron E., Bispo A., Deportes I., Grand C., Cuny P., Maron P.-A., Ranjard L. (2016). Molecular microbiology methods for environmental diagnosis. Environ. Chem. Lett. 14:423-441. 
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  • Bouffaud M.-L., Bernaud E., Colombet A., van Tuinen D., Wipf D., Redecker D. (2016). Regional-scale analysis of arbuscular mycorrhizal fungi: the case of Burgundy vineyards. J. Int. Sci. Vigne Vin. 50:1-8.
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  • Bouffaud M.-L., Creamer R.E., Stone D., Plassart P., van Tuinen D., Lemanceau P., Wipf D., Redecker D. (2016). Indicator species and co-occurrence in communities of arbuscular mycorrhizal fungi at the European scale. Soil Biol. Biochem. 103:464-470. 
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  • Bourgeon M.-A., Paoli J.-N., Jones G., Villette S., Gée C. (2016). Field radiometric calibration of a multispectral on-the-go sensor dedicated to the characterization of vineyard foliage. Comput. Electron. Agric. 123:184-194.
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  • Bourque S., Jeandroz S., Grandperret V., Lehotai N., Aimé S., Soltis D.E., Miles N.W., Melkonian M., Deyholos M.K., Leebens-Mack J.H., Chase M.W., Rothfels C.J., Stevenson D.W., Graham S.W., Wang X., Wu S., Pires J.C., Edger P.P., Yan Z., Xie Y., Carpenter E.J., Wong G.K.S., Wendehenne D., Nicolas-Frances V. (2016). The Evolution of HD2 Proteins in Green Plants. Trends Plant Sci. 21:1008-1016.
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  • Bretagnolle F., Matejicek A., Grégoire S., Reboud X., Gaba S. (2016). Determination of fatty acids content, global antioxidant activity and energy value of weed seeds from farmland in France. Weed Res. 56:78-95.
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  • Cacas J.-L., Buré C., Grosjean K., Gerbeau-Pissot P., Lherminier J., Rombouts Y., Maes E., Bossard C., Gronnier J., Furt F., Fouillen L., Germain V., Bayer E., Cluzet S., Robert F., Schmitter J.-M., Deleu M., Lins L., Simon-Plas F., Mongrand S. (2016). Revisiting plant plasma membrane lipids in tobacco: a focus on sphingolipids. Plant Physiol. 170:367-384.
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  • Cala A., Ghooray K., Fernandez-Aparicio M., Molinillo J.M.G., Galindo J.C.G., Rubiales D., Macias F.A. (2016). Phthalimide-derived strigolactone mimics as germinating agents for seeds of parasitic weeds. Pest Manag. Sci. 72:2069-2081.
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  • Calabrese S., Pérez-Tienda J., Ellerbeck M., Arnould C., Chatagnier O., Boller T., Schüßler A., Brachmann A., Wipf D., Ferrol N., Courty P.-E. (2016). GintAMT3 – a low-affinity ammonium transporter of the arbuscular mycorrhizal Rhizophagus irregularis. Front. Plant Sci. 7:art 679 (14p.). 
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  • Castillo J.M., Béguet J., Martin-Laurent F., Romero E. (2016). Multidisciplinary assessment of pesticide mitigation in soil amended with vermicomposted agroindustrial wastes. J. Hazard. Mater. 304:379-387.
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  • Chaudron C., Chauvel B., Isselin-Nondedeu F. (2016). Effects of late mowing on plant species richness and seed rain in road verges and adjacent arable fields. Agric. Ecosyst. Environ. 223:218-226. 
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  • Cheviron B., Vervoort R.W., Albasha R., Dairon R., Le Priol C., Mailhol J.-C. (2016). A framework to use crop models for multi-objective constrained optimization of irrigation strategies. 86:145-157.
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  • Claverie J., Teyssier L., Brulé D., Héloir M.-C., Connat J.-L., Lamotte O., Poinssot B. (2016). Lutter contre les infections bactériennes. Le système immunitaire des plantes est aussi très efficace ! M S-Med. Sci. 32:335-339.
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  • Colbach N., Chauvel B., Darmency H., Délye C., Le Corre V. (2016). Choosing the best cropping systems to target pleiotropic effects when managing single-gene herbicide resistance in grass weeds. A blackgrass simulation study. Pest Manag. Sci. 72:1910-1925.
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  • Colbach N., Bertrand M., Busset H., Colas F., Dugue F., Farcy P., Fried G., Granger S., Meunier D., Munier-Jolain N.M., Noilhan C., Strbik F., Gardarin A. (2016). Uncertainty analysis and evaluation of a complex, multi-specific weed dynamics model with diverse and incomplete data sets. Environ. Modell. Softw. 86:184-203.
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  • Cordeau S., Triolet M., Wayman S., Steinberg C., Guillemin J.-P. (2016). Bioherbicides: Dead in the water? A review of the existing products for integrated weed management. Crop Prot. 87:44-49. 
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  • Coudrain V., Hedde M., Chauvat M., Maron P.-A., Bourgeois E., Mary B., Léonard J., Ekelund F., Villenave C., Recous S. (2016). Temporal differentiation of soil communities in response to arable crop management strategies. Agric. ecosyst. environ. 225:12-21.
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  • Courty P.-E., Wipf D. (2016). Editorial: Transport in plant microbe interactions. The nutritional transportome in plant-microbe interactions, next stop please. Front. Plant Sci. 7:art 809 (3p.). 
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  • Creamer R.E., Hannula S.E., Van Leeuwen J.P., Stone D., Rutgers M., Schmelz R.M., de Ruiter P.C., Bohse Hendriksen N., Bolger T., Bouffaud M.L., Buée M., Carvalho F., Costa D., Dirilgen T., Francisco R., Griffiths B.S., Griffiths R., Martin F., Martins da Silva P., Mendes S., Morais P.V., Pereira C., Philippot L., Plassart P., Redecker D., Römbke J., Sousa J.P., Wouterse M., Lemanceau P. (2016). Ecological network analysis reveals the inter-connection between soil biodiversity and ecosystem function as affected by land use across Europe. Appl. Soil Ecol. (Special Issue: Soil Biodiversity) 97:112-124.
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  • Daire X., Chiltz A., Guillier C., Héloir M.-C., Jacquens L., Klinguer A., Poinssot B., Trouvelot S., Adrian M. (2016). Les stimulateurs de défense des plantes (SDP) en viticulture - Un tour d’horizon sur les principes, les applications et les perspectives. Revue des oenologues et des techniques vitivinicoles et oenologiques. 161S:20-22.
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  • Damiani I., Drain A., Guichard M., Balzergue S., Boscari A., Boyer J.-C., Brunaud V., Cottaz S., Rancurel C., Da Rocha M., Fizames C., Fort S., Gaillard I., Danchin E.G.J., Maillol V., Rouached H., Samain E., Su Y.-H., Thouin J., Touraine B., Puppo A., Frachisse J.-M., Pauly N., Sentenac H. (2016). Nod factor effects on root hair-specific transcriptome of Medicago truncatula: focus on plasma membrane transport systems and reactive oxygen species networks. Front. Plant Sci. 7:art 794 (22p.). 
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  • Darmency H., Bellanger S., Matejicek A., Guillemin J.-P. (2016). Long-day-dependent segetal species threatened by climate change. Agric. Ecosyst. Environ. 216:340-343.
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  • Délye C., Causse R., Michel S. (2016). Genetic basis, evolutionary origin and spread of resistance to acetolactate synthase (ALS) inhibiting herbicides in common groundsel (Senecio vulgaris). Pest Manag. Sci. 72:89-102. 
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  • Dequiedt S., Maron P.-A., Ranjard L. (2016). GenoSol Platform: A Logistic and Technical Platform for Conserving and Exploring Soil Microbial Diversity. Meth. Mol. Biol. (Microbial Environmental Genomics - MEG) 1399:55-60. 
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  • Derrien D., Dignac M.-F., Basile-Doelsch I., Barot S., Cécillon L., Chenu C., Chevallier T., Freschet G.T., Garnier P., Guenet B., Hedde M., Klumpp K., Lashermes G., Maron P.-A., Nunan N., Roumet C., Barré P. (2016). Stocker du C dans les sols : Quels mécanismes, quelles pratiques agricoles, quels indicateurs ? Etude et Gestion des Sols. 23:193-223. 
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  • Desgroux A., L’Anthoëne V., Roux-Duparque M., Rivière J.-P., Aubert G., Tayeh N., Moussart A., Mangin P., Vetel P., Piriou C., McGee R., Coyne C.J., Burstin J., Baranger A., Manzanares-Dauleux M., Bourion V., Pilet-Nayel M.-L. (2016). Genome-wide association mapping of partial resistance to Aphanomyces euteiches in pea. BMC genomics. 17:art 124 (21p.). 
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  • Devers-Lamrani M., Spor A., Mounier A., Martin-Laurent F. (2016). Draft genome sequence of Pseudomonas sp. Strain ADP, a bacterial model for studying the degradation of the herbicide atrazine. Genome announcements. 4: art e01733-15 (2p.). 
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  • Domeignoz-Horta L.A., Putz M., Spor A., Bru D., Breuil M.-C., Hallin S., Philippot L. (2016). Non-denitrifying nitrous oxide-reducing bacteria - An effective N2O sink in soil. Soil Biol. Biochem. 103:376-379.
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  • Deytieux V., Munier-Jolain N., Caneill J. (2016). Assessing the sustainability of cropping systems in single- and multi-site studies. A review of methods. Eur. J. Agron. 72:107-126.
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  • Durand N., Hamelin B., Deschamps P., Gunnell Y., Curmi P. (2016). Systematics of U-Th disequilibrium in calcrete profiles: Lessons from southwest India. Chem. Geol. 446:54-69.
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  • Edel-Hermann V., Sautour M., Gautheron N., Laurent J., Aho S., Bonnin A., Sixt N., Hartemann P., Dalle F., Steinberg C. (2016). A clonal lineage of Fusarium oxysporum circulates in tap water of different French hospitals. Appl. Environ. Microbiol. 82:6483-6489. 
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  • Ellies-Oury M.-P., Pierret P., Jouanno M., Cointault F. (2016). Jugement de la couleur des carcasses en abattoir. Eléments d’objectivation de la notation experte de la couleur des viandes de gros bovins Charolais. Viandes prod. carnés (Aubière). 32:(7p.). 
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  • Emer C., Memmott J., Vaughan I.P., Montoya D., Tylianakis J.M. (2016). Species roles in plant-pollinator communities are conserved across native and alien ranges. Divers. Distrib. 22:841-852. 
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  • EFSA Scientific Committee and the members of the working group including Martin-Laurent F. (2016). Recovery in environmental risk assessments at EFSA. EFSA Journal. 14:art 4313 (85p.).
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  • Fernandez-Aparicio M., Flores F., Rubiales D. (2016). The effect of orobanche crenata infection severity in faba bean, field pea, and grass pea productivity. Front. Plant Sci. 7:1409 (8p.).
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  • Fernandez-Aparicio M., Gibot-Leclerc S., Reboud X. (2016). Broomrape weeds. Underground mechanisms of parasitism and associated strategies for their control: a review. Front. Plant Sci. 7:137.
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  • Fernandez-Aparicio M., Masi M., Maddau L., Cimmino A., Evidente M., Rubiales D., Evidente A. (2016). Induction of Haustorium Development by Sphaeropsidones in Radicles of the Parasitic Weeds Striga and Orobanche. A Structure-Activity Relationship Study. J. Agric. Food Chem. 64:5188-5196. 
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  • Ferrari B., Romani M., Aubert G., Boucherot K., Burstin J., Pecetti L., Huart-Naudet M., Klein A., Annicchiarico P. (2016). Association of SNP markers with agronomic and quality traits of field pea in Italy. Czech J. Genet. Plant Breed. 52:83-93.
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  • Fried G., Dessaint F., Reboud X. (2016). Local and regional changes in taxonomic and functional diversity of arable weed communities in Burgundy (France) between the 1970s and the 2000s. Botany letters. 163:359-371.
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  • Gaba S., Reboud X., Fried G. (2016). Agroecology and conservation of weed diversity in agricultural lands. Botany letters. 163:351-354. (editorial article). 
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  • Gaba S., Gabriel E., Chadoeuf J., Bonneau F., Bretagnolle V. (2016). Herbicides do not ensure for higher wheat yield, but eliminate rare plant species. Sci. Rep. 6: art 30112 (10p.).
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  • Ge Y., Cai Y.M., Bonneau L., Rotari V., Danon A., E.A. M., McLellan H., Mach L., Gallois P. (2016). Inhibition of cathepsin B by caspase-3 inhibitors blocks programmed cell death in Arabidopsis. Cell Death Differ. 23:1493-1501.
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  • Gerbeau-Pissot P., Der C., Grebe M., Stanislas T. (2016). Ratiometric fluorescence live imaging analysis of membrane lipid order in Arabidopsis mitotic cells using a lipid order-sensitive probe. Meth. Mol. Biol. (Plant Cell Division: Methods and Protocols) 1370:227-239. 
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  • Gibot-Leclerc S., Perronne R., Dessaint F., Reibel C., Le corre V. (2016). Assessment of phylogenetic signal in the germination ability of Phelipanche ramosa on Brassicaceae hosts. Weed Res. 56:452-461.
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  • Ghiglione J.-F., Martin-Laurent F., Pesce S. (2016). Microbial ecotoxicology: an emerging discipline facing contemporary environmental threats. Environ. Sci. Pollut. Res. 23:3981-3983.
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  • Graham E.B., Knelman J.E., Schindlbacher A., Siciliano S., Breulmann M., Yannarell A., Bemans J.M., Abell G., Philippot L., Prosser J., Foulquier A., Yuste J.C., Glanville H.C., Jones D.L., Angel F., Salminen J., Newton R.J., Burgmann H., Ingram L.J., Hamer U., Siljanen H.M.P., Peltoniemi K., Potthast K., Baneras L., Hartmann M., Banerjee S., Yu R.Q., Nogaro G., Richter A., Koranda M., Castle S.C., Goberna M., Song B., Chatterjee A., Nunes O.C., Lopes A.R., Cao Y.P., Kaisermann A., Hallin S., Strickland M.S., Garcia-Pausas J., Barba J., Kang H., Isobe K., Papaspyrou S., Pastorelli R., Lagomarsino A., Lindstrom E.S., Basiliko N., Nemergut D.R. (2016). Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes? Front. Microbiol. 7:art 214 (10p.). 
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  • Grangeteau C., Gerhards D., Terrat S., Dequiedt S., Alexandre H., Guilloux-Benatier M., von Wallbrunn C., Rousseaux S. (2016). FT-IR spectroscopy: A powerful tool for studying the inter- and intraspecific biodiversity of cultivable non-Saccharomyces yeasts isolated from grape must. J. Microbiol. Methods. 121:50-58.
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  • Griffiths R.I., Thompson B.C., Plassart P., Hyun G., Stone D., Creamer R.E., Lemanceau P., Bailey M.J. (2016). Mapping and validating predictions of bacterial biodiversity using European and national scale datasets. Appl. Soil Ecol. (Special Issue: Soil Biodiversity) 97:61-68.
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  • Griffiths B.S., Römbke J., Schmelz R.M., Scheffczyk A., Faber J.H., Bloem J., Pérès G., Cluzeau D., Chabbi A., Suhadolc M., Sousa J.P., Martins da Silva P., Carvalho F., Mendes S., Morais P., Francisco R., Pereira C., Bonkowski M., Geisen S., Bardgett R.D., de Vries F.T., Bolger T., Dirilgen T., Schmidt O., Winding A., Hendriksen N.B., Johansen A., Philippot L., Plassart P., Bru D., Thomson B., Griffiths R.I., Bailey M.J., Keith A., Rutgers M., Mulder C., Hannula S.E., Creamer R., Stone D. (2016). Selecting cost effective and policy-relevant biological indicators for European monitoring of soil biodiversity and ecosystem function. Ecol. Indic. 69:213-223.
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  • Grimm P., Julliand V., Philippeau C., Sadet-Bourgeteau S. (2016). Effect of yeast supplementation on hindgut microbiota and digestibility of horses subjected to an abrupt change of hays. Livest. Sci. 186:34-40.
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  • Guigue J., Harir M., Mathieu O., Lucio M., Ranjard L., Lévêque J., Schmitt-Kopplin P. (2016). Ultrahigh-resolution FT-ICR mass spectrometry for molecular characterisation of pressurised hot water-extractable organic matter in soils. Biogeochemistry. 128:307-326. 
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  • Hossard L., Archer D.W., Bertrand M., Colnenne-David C., Debaeke P., Ernfors M., Jeuffroy M.-H., Munier-Jolain N., Nilsson C., Sanford G.R., Snapp S.S., Jensen E.S., Makowski D. (2016). A meta-analysis of maize and wheat yields in low-input vs. conventional and organic systems. Agron. J. 108:1155-1167.
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  • Horrigue W., Dequiedt S., Chemidlin Prévost-Bouré N., Jolivet C., Saby N.P.A., Arrouays D., Bispo A., Maron P.-A., Ranjard L. (2016). Predictive model of soil molecular microbial biomass. Ecol. Indic. 64:203-211.
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  • Houngbédji T., Dessaint F., Nicolardot B., Shykoff J.A., Gibot-Leclerc S. (2016). Weed communities of rain-fed lowland rice vary with infestation by Rhamphicarpa fistulosa. Acta Oecol.-Int. J. Ecol. 77:85-90. 
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  • Jeandroz S., Wipf D., Stuehr D.J., Lamattina L., Melkonian M., Tian Z., Zhu Y., Carpenter E.J., Wong G.K.-S., Wendehenne D. (2016). Occurrence, structure, and evolution of nitric oxide synthase–like proteins in the plant kingdom. Sci. Signal. 9:re2 (10p.). 
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  • Jeudy C., Adrian M., Baussard C., Bernard C., Bernaud E., Bourion V., Busset H., Cabrera Bosquet L., Cointault F., Han S., Lamboeuf M., Moreau D., Pivato B., Prudent M., Trouvelot S., Truong Cellier H.N., Vernoud V., Voisin A.-S., Wipf D., Salon C. (2016). RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation. Plant Methods. 12:Art 31 (18p.). 
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  • Johnson J.-M., Houngnandan P., Kane A., Chatagnier O., Sanon K., Neyra M., van Tuinen D. (2016). Colonization and molecular diversity of arbuscular mycorrhizal fungi associated with the rhizosphere of cowpea (Vigna unguiculata (L.) Walp.) in Benin (West Africa): an exploratory study. Ann. Microbiol. 66:207-221.
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  • Jung J., Philippot L., Park W. (2016). Metagenomic and functional analyses of the consequences of reduction of bacterial diversity on soil functions and bioremediation in diesel-contaminated microcosms. Sci. Rep. 6. art 23012 (10p.).
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  • Karimi B., Meyer C., Gilbert D., Bernard N. (2016). Air pollution below WHO levels decreases by 40 % the links of terrestrial microbial networks. Environ. Chem. Lett. 14:467-475.
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