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Dernière mise à jour : Mai 2018

Menu Logo Principal UB AgroSup CNRS

UMR Agroécologie

2014

ARTICLES A COMITÉ DE LECTURE
  • Abdallah C., Valot B., Guillier C., Mounier A., Balliau T., Zivy M., van Tuinen D., Renaut J., Wipf D., Dumas-Gaudot E., Recorbet G. (2014). The membrane proteome of Medicago truncatula roots displays qualitative and quantitative changes in response to arbuscular mycorrhizal symbiosis. J. Proteomics. 108:354-368.
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  • Anca I.-A., Fromentin J., Bui Q.T., Mhiri C., Grandbastien M.-A., Simon-Plas F. (2014). Different tobacco retrotransposons are specifically modulated by the elicitor cryptogein and reactive oxygen species. J. Plant Physiol. 171:1533-1540.
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  • Banwart S., Black H., Cai Z., Gicheru P., Joosten H., Victoria R., Milne E., Noellemeyer E., Pascual U., Nziguheba G., Vargas R., Bationo A., Buschiazzo D., de-Brogniez D., Melillo J., Richter D., Termansen M., van Noordwijk M., Goverse T., Ballabio C., Bhattacharyya T., Goldhaber M., Nikolaidis N., Zhao Y., Funk R., Duffy C., Pan G., la Scala N., Gottschalk P., Batjes N., Six J., van Wesemael B., Stocking M., Bampa F., Bernoux M., Feller C., Lemanceau P., Montanarella L. (2014). Benefits of soil carbon: report on the outcomes of an international scientific committee on problems of the environment rapid assessment workshop. Carbon Manag. 5:185-192.
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  • Bellanger S., Guillemin J.-P., Darmency H. (2014). Pseudo-self-compatibility in Centaurea cyanus L. Flora. 209:325-331.
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  • Boisard L., Tournier C., Semon E., Noirot E., Guichard E., Salles C. (2014). Salt and fat contents influence the microstructure of model cheeses, chewing/swallowing and in vivo aroma release. Flavour Frag. J. 29:95-106.
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  • Bonneau M., Gaba S., Peyrard N., Sabbadin R. (2014). Reinforcement learning-based design of sampling policies under cost constraints in Markov random fields: Application to weed map reconstruction. Comput. Stat. Data Anal. 72:30-44.
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  • Bourion V., Martin C., de Larambergue H., Jacquin F., Aubert G., Martin-Magniette M.-L., Balzergue S., Lescure G., Citerne S., Lepetit M., Munier-Jolain N., Salon C., Duc G. (2014). Unexpectedly low nitrogen acquisition and absence of root architecture adaptation to nitrate supply in a Medicago truncatula highly branched root mutant. J Exp Bot. 65:2365-2380.
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  • Brosowska-Arendt W., Gallardo K., Sommerer N., Weidner S. (2014). Changes in the proteome of pea (Pisum sativum L.) seeds germinating under optimal and osmotic stress conditions and subjected to post-stress recovery. Acta Physiol. Plant. 36:795-807.
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  • Bruyère R., Quenot J.-P., Prin S., Dalle F., Vigneron C., Aho S., Leon C., Charles P.-E. (2014). Empirical antifungal therapy with an echinocandin in critically-ill patients: prospective evaluation of a pragmatic Candida score-based strategy in one medical ICU. BMC Infect. Dis. 14:art.385 (9p.).
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  • Caneill J., Picard D., Torre A. (2014). Le Développement régional et territorial, un défit pluridisciplinaire. Cah. Agric. 23:67-70.
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  • Carrillo E., Satovic Z., Aubert G., Boucherot K., Rubiales D., Fondevilla S. (2014). Identification of quantitative trait loci and candidate genes for specific cellular resistance responses against Didymellapinodes in pea. Plant Cell Rep. 33:1133-1145.
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  • Cazenave A.B., Salon C., Jeudy C., Duc G., Voisin A.S. (2014). N2 fixation of pea hypernodulating mutants is more tolerant to root pruning than that of wild type. Plant Soil. 378:397-412.
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  • Cederlund H., Wessen E., Enwall K., Jones C.M., Juhanson J., Pell M., Philippot L., Hallin S. (2014). Soil carbon quality and nitrogen fertilization structure bacterial communities with predictable responses of major bacterial phyla. Appl. Soil Ecol. 84:62-68.
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  • Chalal M., Klinguer A., Echairi A., Meunier P., Vervandier-Fasseur D., Adrian M. (2014). Antimicrobial activity of resveratrol analogues. Molecules. 19:7679-7688.
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  • Chemidlin Prévost-Bouré N., Dequiedt S., Thioulouse J., Lelièvre M., Saby N.P.A., Jolivet C., Arrouays D., Plassart P., Lemanceau P., Ranjard L. (2014). Similar processes but different environmental filters for soil bacterial and fungal community composition turnover on a broad spatial scale. PLoS One. 9:e111667 (11p.).
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  • Chevigny E., Quiquerez A., Petit C., Curmi P. (2014). Lithology, landscape structure and management practice changes: Key factors patterning vineyard soil erosion at metre-scale spatial resolution. Catena. 121:354-364.
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  • Cimmino A., Fernandez-Aparicio M., Andolfi A., Basso S., Rubiales D., Evidente A. (2014). Effect of fungal and plant metabolites on broomrapes (Orobanche and Phelipanche spp.) seed germination and radicle growth. J. Agric. Food Chem. 62:10485-10492.
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  • Colbach N., Busset H., Roger-Estrade J., Caneill J. (2014). Predictive modelling of weed seed movement in response to superficial tillage tools. Soil Tillage Res. 138:1-8.
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  • Colbach N., Granger S., Guyot S.H.M., Mézière D. (2014). A trait-based approach to explain weed species response to agricultural practices in a simulation study with a cropping system model. Agric. Ecosyst. Environ. 183:197-204.
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  • Colbach N., Collard A., Guyot S.H.M., Mézière D., Munier-Jolain N. (2014). Assessing innovative sowing patterns for integrated weed management with a 3D crop:weed competition model. Eur. J. Agron. 53:74-89.
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  • Colbach N., Biju-Duval L., Gardarin A., Granger S., Guyot S.H.M., Mézière D., Munier-Jolain N.M., Petit S. (2014). The role of models for multicriteria evaluation and multiobjective design of cropping systems for managing weeds. Weed Res. 54:541-555.
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  • Constancias F., Chemidlin Prévost-Bouré N., Terrat S., Aussems S., Nowak V., Guillemin J.-P., Bonnotte A., Biju-Duval L., Navel A., Martins J.M.F., Maron P.-A., Ranjard L. (2014). Microscale evidence for a high decrease of soil bacterial density and diversity by cropping. Agron. Sustain. Dev. 34:831-840.
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  • Croisier-Bertin D., Hayez D., Da Silva S., Labrousse D., Biek D., Badiou C., Dumitrescu O., Guerard P., Charles P.-E., Piroth L., Lina G., Vandenesch F., Chavanet P. (2014). In Vivo efficacy of ceftaroline fosamil in a methicillin-resistant panton- valentine leukocidin-producing Staphylococcus aureus rabbit Pneumonia model. Antimicrob. Agents Chemother. 58:1855-1861.
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  • Daguerre Y., Siegel K., Edel-Hermann V., Steinberg C. (2014). Fungal proteins and genes associated with biocontrol mechanisms of soil-borne pathogens: a review. Fungal Biol. Rev. 28:97-125.
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  • David V., Terrat S., Herzine K., Claisse O., Rousseaux S., Tourdot-Marechal R., Masneuf-Pomarede I., Ranjard L., Alexandre H. (2014). High-throughput sequencing of amplicons for monitoring yeast biodiversity in must and during alcoholic fermentation. J. Ind. Microbiol. Biotechnol. 41:811-821.
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  • Delhaes L., Filisetti D., Brenier-Pinchart M.-P., Pelloux H., Yera H., Dalle F., Sterkers Y., Varlet-Marie E., Touafek F., Cassaing S., Bastien P. (2014). Freezing and storage at -20 degrees C provides adequate preservation of Toxoplasma gondii DNA for retrospective molecular analysis. Diagn. Microbiol. Infect. Dis. 80:197-199.
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  • Deredjian A., Colinon C., Hien E., Brothier E., Youenou B., Cournoyer B., Dequiedt S., Hartmann A., Jolivet C., Houot S., Ranjard L., Saby N.P.A., Nazaret S. (2014). Low occurrence of Pseudomonas aeruginosa in agricultural soils with and without organic amendment. Front. Cell. Infect. Microbiol. 4:art 53 (12p.).
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  • Dessaint F., Biju-Duval L., Buthiot M., Guillemin J.-P. (2014). Évaluer l’intensité de l’utilisation des pesticides dans les colzas d’hiver : cas de la zone d’étude de Fénay. OCL - Oilseeds and fats, Crops and Lipids. 21:A101 (6p.).
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  • Destrez A., Perrot E., Granger S., Gaillard C., Michelin Y. (2014). Les impacts du campagnol terrestre sur les systèmes fourrragers : le cas de l’élevage bovin allaitant en Bourgogne. Fourrages. 220:291-296.
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  • Devers-Lamrani M., Pesce S., Rouard N., Martin-Laurent F. (2014). Evidence for cooperative mineralization of diuron by Arthrobacter sp. BS2 and Achromobacter sp. SP1 isolated from a mixed culture enriched from diuron exposed environments. Chemosphere. 117:208-215.
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  • D'Hooghe P., Dubousset L., Gallardo K., Kopriva S., Avice J.-C., Trouverie J. (2014). Evidence for proteomic and metabolic adaptations associated with alterations of seed yield and quality in sulfur- limited Brassica napus L. Mol. Cell. Proteomics. 13:1165-1183.
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  • Doisy D., Colbach N., Roger-Estrade J., Médiène S. (2014). Weed seed rain interception by grass cover depends on seed traits. Weed Res. 54:593-602.
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  • Duarte J., Riviere N., Baranger A., Aubert G., Burstin J., Cornet L., Lavaud C., Lejeune-Henaut I., Martinant J.-P., Pichon J.-P., Pilet-Nayel M.-L., Boutet G. (2014). Transcriptome sequencing for high throughput SNP development and genetic mapping in Pea. BMC genomics. 15:126 (15p.).
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  • Dunoyer L., Dijoux L., Bollache L., Lagrue C. (2014). Effects of crayfish on leaf litter breakdown and shredder prey: are native and introduced species functionally redundant ? Biol. Invasions. 16:1545-1555.
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  • Ernfors M., Brennan F.P., Richards K.G., McGeough K.L., Griffiths B.S., Laughlin R.J., Watson C.J., Philippot L., Grant J., Minet E.P., Moynihan E., Muller C. (2014). The nitrification inhibitor dicyandiamide increases mineralization-immobilization turnover in slurry-amended grassland soil. J. Agric. Sci. (Special Issue from the 17th International Nitrogen Workshop, supplement S1) 152:137-149.
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  • Faubladier C., Sadet-Bourgeteau S., Philippeau C., Jacotot E., Julliand V. (2014). Molecular monitoring of the bacterial community structure in foal feces pre- and post-weaning. Anaerobe. 25:61-66.
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  • Fried G., Laitung B., Pierre C., Chagué N., Panetta F.D. (2014). Impact of invasive plants in Mediterranean habitats: disentangling the effects of characteristics of invaders and recipient communities. Biol. Invasions. 16:1639-1658.
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  • Gaba S., Bretagnolle F., Rigaud T., Philippot L. (2014). Managing biotic interactions for ecological intensification of agroecosystems. Front. Ecol. Evol. 2:29 (9p.).
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  • Gaba S., Collas C., Powolnyc T., Bretagnolle F., Bretagnolle V. (2014). Skylarks trade size and energy content in weed seeds to maximize total ingested lipid biomass. Behav. Processes. 108:142-150.
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  • Gaba S., Fried G., Kazakou E., Chauvel B., Navas M.-L. (2014). Agroecological weed control using a functional approach: a review of cropping systems diversity. Agron. Sustain. Dev. 34:103-119.
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  • Gaju O., Allard V., Martre P., Le Gouis J., Moreau D., Bogard M., Hubbart S., Foulkes M.J. (2014). Nitrogen partitioning and remobilization in relation to leaf senescence, grain yield and grain nitrogen concentration in wheat cultivars. Field Crop. Res. 155:213-223.
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  • Gallardo K., Courty P.-E., Le Signor C., Wipf D., Vernoud V. (2014). Sulfate transporters in the plant's response to drought and salinity: regulation and possible functions. Front. Plant Sci. 5:art 580 (7p.).
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  • Garnier A., Darmency H., Tricault Y., Chèvre A.-M., Lecomte J. (2014). A stochastic cellular model with uncertainty analysis to assess the risk of transgene invasion after crop-wild hybridization: Oilseed rape and wild radish as a case study. Ecol. Model. 276:85-94.
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  • Gauthier A., Trouvelot S., Kelloniemi J., Frettinger P., Wendehenne D., Daire X., Joubert J.-M., Ferrarini A., Delledonne M., Flors V., Poinssot B. (2014). The sulfated laminarin triggers a stress transcriptome before priming the SA- and ROS-dependent defenses during grapevine's induced resistance against Plasmopara viticola. PLoS One. 9:e88145 (13p.).
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  • Geillon F., Gondcaille C., Charbonnier S., Van Roermund C.W., Lopez T.E., Dias A.M.M., Pais de Barros J.-P., Arnould C., Wanders R.J., Trompier D., Savary S. (2014). Structure-function analysis of peroxisomal ATP-binding cassette transporters using chimeric dimers. J. Biol. Chem. 289:24511-24520.
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  • Gerbeau-Pissot P., Der C., Thomas D., Anca I.-A., Grosjean K., Roche Y., Perrier-Cornet J.M., Mongrand S., Simon-Plas F. (2014). Modification of Plasma Membrane Organization in Tobacco Cells Elicited by Cryptogein. Plant Physiol. 164:273-286.
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  • Ghiglione J.-F., Martin-Laurent F., Stachowski-Haberkorn S., Pesce S., Vuilleumier S. (2014). The coming of age of microbial ecotoxicology: report on the first two meetings in France. Environ. Sci. Pollut. Res. 21:14241-14245.
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  • Graham E.B., Wieder W.R., Leff J.W., Weintraub S.R., Townsend A.R., Cleveland C.C., Philippot L., Nemergut D.R. (2014). Do we need to understand microbial communities to predict ecosystem function? A comparison of statistical models of nitrogen cycling processes. Soil Biol. Biochem. 68:279-282.
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  • Grandperret V., Nicolas-Frances V., Wendehenne D., Bourque S. (2014). Type-II histone deacetylases: elusive plant nuclear signal transducers. Plant Cell Environ. 37:1259-1269.
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  • Guigue J., Mathieu O., Lévêque J., Mounier S., Laffont R., Maron P.-A., Navarro N., Chateau C., Amiotte-Suchet P., Lucas Y. (2014). A comparison of extraction procedures for water-extractable organic matter in soils. Eur. J. Soil Sci. 65:520-530.
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  • Guillier C., Cacas J.-L., Recorbet G., Depretre N., Mounier A., Mongrand S., Simon Plas F., Wipf D., Dumas-Gaudot E. (2014). Direct purification of detergent-insoluble membranes from Medicago truncatula root microsomes: comparison between floatation and sedimentation. BMC Plant Biol. 14:art 255 (21p.).
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  • Guyot S., Pottier L., Hartmann A., Ragon M., Tiburski J.H., Molin P., Ferret E., Gervais P. (2014). Extremely rapid acclimation of Escherichia coli to high temperature over a few generations of a fed-batch culture during slow warming. MicrobiologyOpen. 3:52-63.
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  • Hafeez F., Philippot L., Spor A., Martin-Laurent F. (2014). Assessment of the resilience and resistance of remediated soils using denitrification as model process. J. Soils Sediments. 14:178-182.
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  • Hartmann A., Topp E. (2014). Gènes de résistance aux antibiotiques dans les effluents d’origine agricole ou urbaine. Bulletin de Veille Scientifique (BVS) de l'ANSES. 25:30-34.
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  • Hayek S., Gianinazzi-Pearson V., Gianinazzi S., Franken P. (2014). Elucidating mechanisms of mycorrhiza-induced resistance against Thielaviopsis basicola via targeted transcript analysis of Petunia hybrida genes. Physiol. Mol. Plant Pathol. 88:67-76.
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  • Hijazi B., Cool S., Vangeyte J., Mertens K., Cointault F., Paindavoine M., Pieters J.G. (2014). High speed stereovision setup for position and motion estimation of fertilizer particles leaving a centrifugal spreader. Sensors. 14:21466-21482.
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  • Hossard L., Philibert A., Bertrand M., Colnenne-David C., Debaeke P., Munier-Jolain N.M., Jeuffroy M.H., Richard G., Makowski D. (2014). Effects of halving pesticide use on wheat production. Sci Rep. 4:srep4405 (7p.).
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  • Houngbedji T., Pocanam Y., Shykoff J., Nicolardot B., Gibot-Leclerc S. (2014). Une nouvelle plante parasite majeure en riziculture au Togo : Rhamphicarpa fistulosa. Cah. Agric. 23:357-365.
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  • Huault E., Laffont C., Wen J., Mysore K.S., Ratet P., Duc G., Frugier F. (2014). Local and systemic regulation of plant root system architecture and symbiotic nodulation by a receptor-like kinase. PLoS Genet. 10:art e1004891 (11p.).
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  • Jones C.M., Spor A., Brennan F.P., Breuil M.-C., Bru D., Lemanceau P., Griffiths B., Hallin S., Philippot L. (2014). Recently identified microbial guild mediates soil N2O sink capacity. Nat. Clim. Chang. 4:801–805.
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  • Jonkers W., Xayamongkhon H., Haas M., Olivain C., van der Does H.C., Broz K., Rep M., Alabouvette C., Steinberg C., Kistler H.C. (2014). EBR1 genomic expansion and its role in virulence of Fusarium species. Environ. Microbiol. 16:1982-2003.
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  • Karlsson I., Friberg H., Steinberg C., Persson P. (2014). Fungicide effects on fungal community composition in the wheat phyllosphere. Plos One. 9:e111786 (12p.).
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  • Karpouzas D.G., Papadopoulou E., Ipsilantis I., Friedel I., Petric I., Udikovic-Kolic N., Djuric S., Kandeler E., Menkissoglu-Spiroudi U., Martin-Laurent F. (2014). Effects of nicosulfuron on the abundance and diversity of arbuscular mycorrhizal fungi used as indicators of pesticide soil microbial toxicity. Ecol. Indic. 39:44-53.
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  • Karpouzas D.G., Kandeler E., Bru D., Friedel I., Auer Y., Kramer S., Vasileiadis S., Petric I., Udikovic-Kolic N., Djuric S., Martin-Laurent F. (2014). A tiered assessment approach based on standardized methods to estimate the impact of nicosulfuron on the abundance and function of the soil microbial community. Soil Biol. Biochem. 75:282-291.
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  • Klein A., Houtin H., Rond C., Marget P., Jacquin F., Boucherot K., Huart M., Riviere N., Boutet G., Lejeune-Henaut I., Burstin J. (2014). QTL analysis of frost damage in pea suggests different mechanisms involved in frost tolerance. Theor. Appl. Genet. 127:1319-1330.
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  • Koen E., Trapet P., Brulé D., Kulik A., Klinguer A., Atauri-Miranda L., Meunier-Prest R., Boni G., Glauser G., Mauch-Mani B., Wendehenne D., Besson-Bard A. (2014). Beta-Aminobutyric Acid (BABA)-Induced Resistance in Arabidopsis thaliana: Link with Iron Homeostasis. Mol. Plant-Microbe Interact. 27:1226-1240.
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  • Krause S., Le Roux X., Niklaus P.A., Van Bodegom P.M., Lennon J.T., Bertilsson S., Grossart H.-P., Philippot L., Bodelier P.L.E. (2014). Trait-based approaches for understanding microbial biodiversity and ecosystem functioning. Front. Microbiol. 5:art 251 (10p.).
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  • Lachhab N., Sanzani S.M., Adrian M., Chiltz A., Balacey S., Boselli M., Ippolito A., Poinssot B. (2014). Soybean and casein hydrolysates induce grapevine immune responses and resistance against Plasmopara viticola. Front. Plant Sci. 5:art 716 (10p.).
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  • Lagrue C., Podgorniak T., Lecerf A., Bollache L. (2014). An invasive species may be better than none: invasive signal and native noble crayfish have similar community effects. Freshw. Biol. 59:1982-1995.
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  • Lagrue C., Wattier R., Galipaud M., Gauthey Z., Rullmann J.-P., Dubreuil C., Rigaud T., Bollache L. (2014). Confrontation of cryptic diversity and mate discrimination within Gammarus pulex and Gammarus fossarum species complexes. Freshw. Biol. 59:2555-2570.
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  • Leborgne-Castel N., Bouhidel K. (2014). Plasma membrane protein trafficking in plant-microbe interactions: a plant cell point of view. Front. Plant Sci. 5:art 735 (13p.).
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  • Lechenet M., Bretagnolle V., Bockstaller C., Boissinot F., Petit M.-S., Petit S., Munier-Jolain N.M. (2014). Reconciling pesticide reduction with economic and environmental sustainability in arable farming. PLoS One. 9:e97922 (10p.).
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  • Le Corre V., Reibel C., Gibot-Leclerc S. (2014). Development of microsatellite markers in the branched broomrape Phelipanche ramosa L. (Pomel) and evidence for host-associated genetic divergence. Int. J. Mol. Sci. 15:994-1002.
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  • Le Corre V., Bellanger S., Guillemin J.-P., Darmency H. (2014). Genetic diversity of the declining arable plant Centaurea cyanus: population fragmentation within an agricultural landscape is not associated with enhanced spatial genetic structure. Weed Res. 54:436-444.
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  • Legouge C., Caillot D., Chretien M.L., Lafon I., Ferrant E., Audia S., Pages P.B., Roques M., Estivalet L., Martin L., Maitre T., Bastie J.N., Dalle F. (2014). The reversed halo sign: pathognomonic pattern of pulmonary mucormycosis in leukemic patients with neutropenia? Clin. Infect. Dis. 58:672-678.
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  • Lienhard P., Terrat S., Chemidlin-Prévost-Bouré N., Nowak V., Regnier T., Sayphoummie S., Panyasiri K., Tivet F., Mathieu O., Lévêque J., Maron P.-A., Ranjard L. (2014). Pyrosequencing evidences the impact of cropping on soil bacterial and fungal diversity in Laos tropical grassland. Agron. Sustain. Dev. 34:525-533.
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  • Martin-Laurent F., Marti R., Waglechner N., Wright G.D., Topp E. (2014). Draft genome sequence of the sulfonamide antibiotic-degrading Microbacterium sp. strain C448. Genome announcements. 2:e01113-13 (2p.).
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