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Dernière mise à jour : Mai 2018

Menu Logo Principal UB AgroSup CNRS

UMR Agroécologie

2013

ARTICLES A COMITÉ DE LECTURE
  • Aimé S., Alabouvette C., Steinberg C., Olivain C. (2013). The endophytic strain Fusarium oxysporum Fo47: a good candidate for priming the defense responses in tomato roots. Mol. Plant-Microbe Interact. 26:918-926.
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  • Alignier A., Ricci B., Biju-Duval L., Petit S. (2013). Identifying the relevant spatial and temporal scales in plant species occurrence models: The case of arable weeds in landscape mosaic of crops. Ecol. Complex. 15:17-25.
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  • Ansemant T., Mahy S., Piroth C., Ornetti P., Ewing S., Guilland J.-C., Croisier D., Duvillard L., Chavanet P., Maillefert J.-F., Piroth L. (2013). Severe hypovitaminosis D correlates with increased inflammatory markers in HIV infected patients. BMC Infect. Dis. 13:(7p.).
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  • Atif R.M., Boulisset F., Conreux C., Thompson R., Ochatt S.J. (2013). In vitro auxin treatment promotes cell division and delays endoreduplication in developing seeds of the model legume species Medicago truncatula. Physiol. Plant. 148:549-559.
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  • Babut M., Arts G., Caracciolo A.B., Carluer N., Domange N., Friberg N., Gouy V., Grung M., Lagadic L., Martin-Laurent F., Mazzella N., Pesce S., Real B., Reichenberger S., Roex E.W.M., Romijn K., Rottele M., Stenrod M., Tournebize J., Vernier F., Vindimian E. (2013). Pesticide risk assessment and management in a globally changing world-report from a European interdisciplinary workshop. Environ. Sci. Pollut. Res. 20:8298-8312.
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  • Barnard R.L., Osborne C.A., Firestone M.K. (2013). Responses of soil bacterial and fungal communities to extreme desiccation and rewetting. Isme J. 7:2229-2241.
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  • Baumann K., Dignac M.-F., Rumpel C., Bardoux G., Sarr A., Steffens M., Maron P.-A. (2013). Soil microbial diversity affects soil organic matter decomposition in a silty grassland soil. Biogeochemistry. 114:201-212.
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  • Baux A., Colbach N., Allirand J.M., Jullien A., Ney B., Pellet D. (2013). Insights into temperature effects on the fatty acid composition of oilseed rape varieties. Eur. J. Agron. 49:12-19.
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  • Beaune D., Fruth B., Bollache L., Hohmann G., Bretagnolle F. (2013). Doom of the elephant-dependent trees in a Congo tropical forest. For. Ecol. Manage. 295:109-117.
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  • Beaune D., Bollache L., Muganza M.D., Bretagnolle F., Hohmann G., Fruth B. (2013). Artificial germination activation of Dialium corbisieri by imitation of ecological process. Journal of Sustainable Forestry. 32:565-575.
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  • Beaune D., Bretagnolle F., Bollache L., Bourson C., Hohmann G., Fruth B. (2013). Ecological services performed by the bonobo (Pan paniscus): seed dispersal effectiveness in tropical forest. J. Trop. Ecol. 29:367-380.
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  • Beaune D., Bretagnolle F., Bollache L., Hohmann G., Surbeck M., Fruth B. (2013). Seed dispersal strategies and the threat of defaunation in a Congo forest. Biodivers. Conserv. 22:225-238.
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  • Beaune D., Bretagnolle F., Bollache L., Hohmann G., Surbeck M., Bourson C., Fruth B. (2013). The Bonobo-Dialium Positive Interactions: Seed Dispersal Mutualism. Am. J. Primatol. 75:394-403.
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  • Betelli L., Duquenne P., Grenouillet F., Simon X., Scherer E., Géhin E., Hartmann A. (2013). Development and evaluation of a method for the quantification of airborne Thermoactinomyces vulgaris by real-time PCR. J. Microbiol. Methods. 92:25-32.
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  • Billiot B., Cointault F., Journaux L., Simon J.-C., Gouton P. (2013). 3D Image Acquisition System Based on Shape from Focus Technique. Sensors. 13:5040-5053.
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  • Binet M.N., Sage L., Malan C., Clément J.C., Redecker D., Wipf D., Geremia R.A., Lavorel S., Mouhamadou B. (2013). Effects of mowing on fungal endophytes and arbuscular mycorrhizal fungi in subalpine grasslands. Fungal Ecol. 6:248-255.
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  • Blazewicz S.J., Barnard R.L., Daly R.A., Firestone M.K. (2013). Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses. Isme J. 7:2061-2068.
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  • Blot S., Charles P.E. (2013). Fungal sepsis in the ICU: are we doing better? Trends in incidence, diagnosis, and outcome. Minerva Anestesiol. 79:1396-1405.
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  • Bohan D.A., Woodward G. (2013). Preface. Editorial commentary: The potential for network approaches to improve knowledge, understanding, and prediction of the structure and functioning of agricultural systems. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:XIII-XVIII.
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  • Bohan D.A., Raybould A., Mulder C., Woodward G., Tamaddoni-Nezhad A., Bluthgen N., Pocock M.J.O., Muggleton S., Evans D.M., Astegiano J., Massol F., Loeuille N., Petit S., Macfadyen S. (2013). Networking agroecology: integrating the diversity of agroecosystem interactions. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:1-67.
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  • Boisard L., Andriot I., Arnould C., Achilleos C., Salles C., Guichard E. (2013). Structure and composition of model cheeses influence sodium NMR mobility, kinetics of sodium release and sodium partition coefficients. Food Chem. 136:1070-1077.
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  • Bonneau L., Huguet S., Wipf D., Pauly N., Truong H.-N. (2013). Combined phosphate and nitrogen limitation generates a nutrient stress transcriptome favorable for arbuscular mycorrhizal symbiosis in Medicago truncatula. New Phytol. 199:188-202.
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  • Casieri L., Ait Lahmidi N., Doidy J., Veneault-Fourrey C., Migeon A., Bonneau L., Courty P.-E., Garcia K., Charbonnier M., Delteil A., Brun A., Zimmermann S., Plassard C., Wipf D. (2013). Biotrophic transportome in mutualistic plant–fungal interactions. Mycorrhiza. 23:597-625.
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  • Charles P.E., Bruyère R. (2013). Preventing Invasive Candidiasis in High-Risk Critically III Patients: Avoid Antibiotics or Give Probiotics? Crit. Care Med. 41:689-690.
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  • Chauvel B., Martinez Q. (2013). Allergy to common ragweed: What means for checking its invasion? Rev. Fr. Allergol. 53:229-234.
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  • Colbach N., Mézière D. (2013). Using a sensitivity analysis of a weed dynamics model to develop sustainable cropping systems. I. Annual interactions between crop management techniques and biophysical field state variables. J. Agric. Sci. 151:229-245.
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  • Colbach N., Granger S., Mézière D. (2013). Using a sensitivity analysis of a weed dynamics model to develop sustainable cropping systems. II. Long-term effect of past crops and management techniques on weed infestation. J. Agric. Sci. 151:247-267.
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  • Colbach N., Tschudy C., Meunier D., Houot S., Nicolardot B. (2013). Weed seeds in exogenous organic matter and their contribution to weed dynamics in cropping systems. A simulation approach. Eur. J. Agron. 45:7-19.
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  • Colinon C., Deredjian A., Hien E., Brothier E., Bouziri L., Cournoyer B., Hartmann A., Henry S., Jolivet C., Ranjard L., Nazaret S. (2013). Detection and enumeration of Pseudomonas aeruginosa in soil and manure assessed by an ecfX qPCR assay. J. Appl. Microbiol. 114:1734-1749.
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  • Correa-Galeote D., Marco D.E., Tortosa G., Bru D., Philippot L., Bedmar E.J. (2013). Spatial distribution of N-cycling microbial communities showed complex patterns in constructed wetland sediments. FEMS Microbiol. Ecol. 83:340-351.
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  • Darmency H. (2013). Pleiotropic effects of herbicide-resistance genes on crop yield: a review. Pest Manag Sci 69:897-904.
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  • Davey J.S., Vaughan I.P., Andrew King R., Bell J.R., Bohan D.A., Bruford M.W., Holland J.M., Symondson W.O.C. (2013). Intraguild predation in winter wheat: prey choice by a common epigeal carabid consuming spiders. J. Appl. Ecol. 50:271-279.
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  • Délye C. (2013). Unravelling the genetic bases of non-target-site-based resistance (NTSR) to herbicides: a major challenge for weed science in the forthcoming decade. Pest Manag Sci. 69:176-187.
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  • Délye C., Deulvot C., Chauvel B. (2013). DNA Analysis of Herbarium Specimens of the Grass Weed Alopecurus myosuroides Reveals Herbicide Resistance Pre-Dated Herbicides. PLoS One. 8:e75117 (8p.).
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  • Délye C., Jasieniuk M., Le Corre V. (2013). Deciphering the evolution of herbicide resistance in weeds. Trends Genet. 29:649-658.
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  • Délye C., Menchari Y., Michel S., Cadet E., Le Corre V. (2013). A new insight into arable weed adaptive evolution: mutations endowing herbicide resistance also affect germination dynamics and seedling emergence. Ann. Bot. 111:681-691.
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  • Duhoux A., Délye C. (2013). Reference Genes to Study Herbicide Stress Response in Lolium sp.: Up-Regulation of P450 Genes in Plants Resistant to Acetolactate-Synthase Inhibitors. PLoS One. 8:e63576 (12p.).
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  • Dupuy A.-M., Philippart F., Pean Y., Lasocki S., Charles P.-E., Chalumeau M., Claessens Y.-E., Quenot J.-P., Gras-Le Guen C., Ruiz S., Luyt C.-E., Roche N., Stahl J.-P., Bedos J.-P., Pugin J., Gauzit R., Misset B., Brun-Buisson C., Maurice Rapin Institute Biomarkers G. (2013). Role of biomarkers in the management of antibiotic therapy: an expert panel review: I - currently available biomarkers for clinical use in acute infections. Annals of intensive care. 3:22 (8p.).
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  • Duru M., Jouany C., Theau J.-P., Granger S., Cruz P. (2013). L'écologie fonctionnelle pour évaluer et prédire l'aptitude des prairies permanentes à rendre des services. Fourrages. 213:21-34.
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  • Elmaghrabi A.M., Ochatt S., Rogers H.J., Francis D. (2013). Enhanced tolerance to salinity following cellular acclimation to increasing NaCl levels in Medicago truncatula. Plant Cell Tissue Organ Cult. 114:61-70.
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  • Flores F., Hybl M., Knudsen J.C., Marget P., Muel F., Nadal S., Narits L., Raffiot B., Sass O., Solis I., Winkler J., Stoddard F.L., Rubiales D. (2013). Adaptation of spring faba bean types across European climates. Field Crop. Res. 145:1-9.
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  • Galipaud M., Bollache L., Dechaume-Moncharmont F.X. (2013). Assortative mating by size without a size-based preference: the female-sooner norm as a mate-guarding criterion. Anim. Behav. 85:35-41.
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  • Garcia-Sanchez A.M., Ariza C., Ubeda J.M., Martin-Sanchez P.M., Jurado V., Bastian F., Alabouvette C., Saiz-Jimenez C. (2013). Free-living amoebae in sediments from the Lascaux Cave in France. Int. J. Speleol. 42:9-13.
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  • Gard B., Bretagnolle F., Dessaint F., Laitung B. (2013). Invasive and native populations of common ragweed exhibit strong tolerance to foliar damage. Basic Appl. Ecol. 14:28-35.
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  • Germon J.-C. (2013). Gestion de la fertilisation azotée en agriculture : enjeux environnementaux et perspectives agronomiques au niveau du territoire français. Cah. Agric. 22:241-248.
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  • Gibot-Leclerc S., Dessaint F., Reibel C., Le Corre V. (2013). Phelipanche ramosa (L.) Pomel populations differ in life-history and infection response to hosts. Flora. 208:247-252.
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  • Gibot-Leclerc S., Abdennebi-Abdemessed N., Reibel C., Colbach N. (2013). Non-host facilitators, a new category that unexpectedly favours parasitic weeds. Agron. Sustain. Dev. 33:787-793.
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  • Gilg O., Moe B., Hanssen S.A., Schmidt N.M., Sittler B., Hansen J., Reneerkens J., Sabard B., Chastel O., Moreau J., Phillips R.A., Oudman T., Biersma E.M., Fenstad A.A., Lang J., Bollache L. (2013). Trans-equatorial migration routes, staging sites and wintering areas of a high-arctic avian predator: the long-tailed skua (Stercorarius longicaudus). PLoS One. 8:e64614 (10p.).
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  • Griffiths B.S., Philippot L. (2013). Insights into the resistance and resilience of the soil microbial community. FEMS Microbiol Rev. 37:112-129.
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  • Guillemin J.P., Gardarin A., Granger S., Reibel C., Munier-Jolain N., Colbach N. (2013). Assessing potential germination period of weeds with base temperatures and base water potentials. Weed Res. 53:76-87.
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  • Guitard J., Angoulvant A., Letscher-Bru V., L’Ollivier C., Cornet M., Dalle F., Grenouillet F., Lacroix C., Vekhoff A., Maury E., Caillot D., Charles P.E., Pili-Floury S., Herbrecht R., Raffoux E., Brethon B., Hennequin C. (2013). Invasive infections due to Candida norvegensis and Candida inconspicua: report of 12 cases and review of the literature. Med. Mycol. 51:795-799.
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  • Hartney S.L., Mazurier S., Girard M.K., Mehnaz S., Davis II E.W., Gross H., Lemanceau P., Loper J.E. (2013). Ferric-Pyoverdine Recognition by Fpv Outer Membrane Proteins of Pseudomonas protegens Pf-5. J. Bacteriol. 195:765-776.
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  • Hussain S., Devers-Lamrani M., Spor A., Rouard N., Porcherot M., Béguet J., Martin-Laurent F. (2013). Mapping field spatial distribution patterns of isoproturon-mineralizing activity over a three-year winter wheat/rape seed/barley rotation. Chemosphere 90:2499-2511.
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  • Hussain T., Roohi A., Munir S., Ahmed I., Khan J., Edel-Hermann V., Kim K.Y., Anees M. (2013). Biochemical characterization and identification of bacterial strains isolated from drinking water sources of Kohat, Pakistan. Afr. J. Microbiol. Res. 7:1579-1590.
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  • Jeandroz S., Lamotte O., Astier J., Rasul S., Trapet P., Besson-Bard A., Bourque S., Nicolas-Frances V., Ma W., Berkowitz G.A., Wendehenne D. (2013). There's more to the picture than meets the eye: nitric oxide cross talk with Ca2+ signaling. Plant Physiol. 163:459-470.
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  • Jones C.M., Graf D.R., Bru D., Philippot L., Hallin S. (2013). The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink. ISME J. 7:417-426.
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  • Jouquet P., Maron P.-A., Nowak V., Duc T.T. (2013). Utilization of microbial abundance and diversity as indicators of the origin of soil aggregates produced by earthworms. Soil Biol. Biochem. 57:950-952.
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  • Kaisermann A., Roguet A., Nunan N., Maron P.-A., Ostle N., Lata J.-C. (2013). Agricultural management affects the response of soil bacterial community structure and respiration to water-stress. Soil Biol. Biochem. 66:69-77.
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  • Kati V., Le Corre V., Michel S., Jaffrelo L., Poncet C., Délye C. (2013). Isolation and Characterisation of 11 Polymorphic Microsatellite Markers in Papaver rhoeas L. (Corn Poppy), a Major Annual Plant Species from Cultivated Areas. Int. J. Mol. Sci. 14:470-479.
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  • Koegel S., Lahmidi N.A., Arnould C., Chatagnier O., Walder F., Ineichen K., Boller T., Wipf D., Wiemken A., Courty P.E. (2013). The family of ammonium transporters (AMT) in Sorghum bicolor: two AMT members are induced locally, but not systemically in roots colonized by arbuscular mycorrhizal fungi. New Phytol. 198:853-865.
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  • Koen E., Lamotte O., Besson-Bard A., Bourque S., Nicolas-Frances V., Jeandroz S., Wendehenne D. (2013). Le monoxyde d’azote, un acteur de l’immunité chez les plantes. M S-Medecine Sciences. 29:309-316.
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  • Koen E., Besson-Bard A., Duc C., Astier J., Gravot A., Richaud P., Lamotte O., Boucherez J., Gaymard F., Wendehenne D. (2013). Arabidopsis thaliana nicotianamine synthase 4 is required for proper response to iron deficiency and to cadmium exposure. Plant Sci. 209:1-11.
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  • Koné M., Koné T., Kouakou H.T., Konaté S., Ochatt J.S. (2013). Plant regeneration via direct shoot organogenesis from cotyledon explants of Bambara groundnut, Vigna subterranea (L.) Verdc. Biotechnol. Agron. Soc. 17:584-592.
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  • Lacanette D., Large D., Ferrier C., Aujoulat N., Bastian F., Denis A., Jurado V., Kervazo B., Konik S., Lastennet R., Malaurent P., Saiz-Jimenez C. (2013). A laboratory cave for the study of wall degradation in rock art caves: an implementation in the Vezere area. J. Archaeol. Sci. 40:894-903.
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  • Ladoire S., Pauchard L.-A., Barbar S.-D., Tissieres P., Croisier-Bertin D., Charles P.-E. (2013). Impact of the prone position in an animal model of unilateral bacterial pneumonia undergoing mechanical ventilation. Anesthesiology. 118:1150-1159.
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  • Lagrue C., Guvenatam A., Bollache L. (2013). Manipulative parasites may not alter intermediate host distribution but still enhance their transmission: field evidence for increased vulnerability to definitive hosts and non-host predator avoidance. Parasitology. 140:258-265.
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  • Le Roux X., Schmid B., Poly F., Barnard R.L., Niklaus P.A., Guillaumaud N., Habekost M., Oelmann Y., Philippot L., Salles J.F., Schloter M., Steinbeiss S., Weigelt A. (2013). Soil environmental conditions and microbial build-up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands. PloS One. 8:e61069 (11p.).
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  • Leplat J., Friberg H., Abid M., Steinberg C. (2013). Survival of Fusarium graminearum, the causal agent of Fusarium head blight. A review. Agron. Sustain. Dev. 33:97-111.
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  • Lesuffleur F., Salon C., Jeudy C., Cliquet J.B. (2013). Use of a 15N2 labelling technique to estimate exudation by white clover and transfer to companion ryegrass of symbiotically fixed N. Plant Soil. 369:187-197.
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  • Lienhard P., Tivet F., Chabanne A., Dequiedt S., Lelièvre M., Sayphoummie S., Leudphanane B., Chemidlin Prévost-Bouré N., Séguy L., Maron P.A., Ranjard L. (2013). No-till and cover crops shift soil microbial abundance and diversity in Laos tropical grasslands. Agron. Sustain. Dev. 33:375-384.
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  • Lienhard P., Terrat S., Mathieu O., Lévêque J., Chemidlin Prévost-Bouré N., Nowak V., Regnier T., Faivre C., Sayphoummie S., Panyasiri K., Tivet F., Ranjard L., Maron P.-A. (2013). Soil microbial diversity and C turnover modified by tillage and cropping in Laos tropical grassland. Environ. Chem. Lett. 11:391-398.
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  • Li Kim Khiook I., Schneider C., Heloir M.-C., Bois B., Daire X., Adrian M., Trouvelot S. (2013). Image analysis methods for assessment of H2O2 production and Plasmopara viticola development in grapevine leaves: Application to the evaluation of resistance to downy mildew. J. Microbiol. Methods. 95:235-244.
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  • Liu Y.-B., Wei W., Ma K.-P., Darmency H. (2013). Spread of introgressed insect-resistance genes in wild populations of Brassica juncea: a simulated in-vivo approach. Transgenic Res. 22:747-756.
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  • Liu Y., Gianinazzi-Pearson V., Arnould C., Wipf D., Zhao B., van Tuinen D. (2013). Fungal genes related to calcium homeostasis and signalling are upregulated in symbiotic arbuscular mycorrhiza interactions. Fungal Biol. 117:22-31.
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  • Liu Y.-B., Wei W., Ma K., Li J., Liangd Y., Darmency H. (2013). Consequences of gene flow between oilseed rape (Brassica napus) and its relatives. Plant Sci. 211:42-51.
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  • Locatelli A., Spor A., Jolivet C., Piveteau P., Hartmann A. (2013). Biotic and abiotic soil properties influence survival of Listeria monocytogenes in soil. Plos One. 8:e75969 (8p.).
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  • Locatelli A., Depret G., Jolivet C., Henry S., Dequiedt S., Piveteau P., Hartmann A. (2013). Nation-wide study of the occurrence of Listeria monocytogenes in French soils using culture-based and molecular detection methods. J. Microbiol. Methods. 93:242-250.
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  • Luis P., Gauthier A., Trouvelot S., Poinssot B., Frettinger P. (2013). Identification of Plasmopara viticola Genes Potentially Involved in Pathogenesis on Grapevine Suggests New Similarities Between Oomycetes and True Fungi. Phytopathology. 103:1035-1044.
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  • Lyautey E., Hallin S., Teissier S., Iribar A., Compin A., Philippot L., Garabetian F. (2013). Abundance, activity and structure of denitrifier communities in phototrophic river biofilms (River Garonne, France). Hydrobiologia. 716:177-187.
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  • Manzoor H., Kelloniemi J.-P., Chiltz A., Wendehenne D., Pugin A., Poinssot B., Garcia-Brugger A. (2013). Involvement of the glutamate receptor AtGLR3.3 in plant defense signaling and resistance to Hyaloperonospora arabidopsidis. Plant J.76:466-480.
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  • Martin-Laurent F., Kandeler E., Petric I., Djuric S., Karpouzas D. (2013). ECOFUN-MICROBIODIV: an FP7 European project for developing and evaluating innovative tools for assessing the impact of pesticides on soil functionalmicrobial diversity—towards new pesticide registration regulation? Environ Sci Pollut Res. 20:1203-1205.
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  • Martin-Sanchez P.M., Bastian F., Alabouvette C., Saiz-Jimenez C. (2013). Real-time PCR detection of Ochroconis lascauxensis involved in the formation of black stains in the Lascaux Cave, France. Sci. Total Environ. 443:478-484.
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  • Massol F., Petit S. (2013). Interaction networks in agricultural landscape mosaics. Adv. Ecol. Res. (special issue: Ecological Networks in an Agricultural World) 49:291-338.
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